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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3198643_3202768_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3198643 - 3202768
Intron Length:
4126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAA
U12 Branch Point Sequence:
GAATCCCTAATA
Flanking Amino Acid:
GQMASMFFNKVGVNLFYFCI
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
88.6
0.87
0.7
84
24.1
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
60.9
0.34
1.7
67.57
38.2

Associated Gene:

Gene:
TMEM104
Ensembl Gene ID:
ENSAPLG00000004556
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004684
3192551 - 3229201
36651