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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3203703_3218483_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3203703 - 3218483
Intron Length:
14781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAACC
Flanking Amino Acid:
RRIDAYRLYLAAFTLLLGPF
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.7
0.67
0.9
70
41.4
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
79.9
0.92
1
82.49
30.8

Associated Gene:

Gene:
TMEM104
Ensembl Gene ID:
ENSAPLG00000004556
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004684
3192551 - 3229201
36651