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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3236544_3236975_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3236544 - 3236975
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGGTGC
5'SS Class:
major
3'SS Sequence:
TGCCTGGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GGGTTTTCACCC
Flanking Amino Acid:
DLALLQFLGDGETQKLETVW
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.1
53.6
40.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
63.6
0.31
1
54
41.5
Minor 5ss
30.4
-2.2
3.5
37.4
42.8
Minor BPS
45.4
-0.3
1.7
51.25
40

Associated Gene:

Gene:
GRIN2C
Ensembl Gene ID:
ENSAPLG00000004598
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047984
3234633 - 3243278
8646
ENSAPLT00000040996
3234823 - 3244935
10113
ENSAPLT00000004733
3234633 - 3241982
7350