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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3237771_3237999_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3237771 - 3237999
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGCG
5'SS Class:
major
3'SS Sequence:
CTCCGCGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
TGTGACGGAGCT
Flanking Amino Acid:
DTVSGLSDRKFQKPQEQYPP
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
58
38.5
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
68.7
0.42
0.9
61
35.1
Minor 5ss
22.7
-3.1
3.4
28.9
43.8
Minor BPS
40.1
-0.6
2.4
62.75
46.6

Associated Gene:

Gene:
GRIN2C
Ensembl Gene ID:
ENSAPLG00000004598
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047984
3234633 - 3243278
8646
ENSAPLT00000040996
3234823 - 3244935
10113
ENSAPLT00000004733
3234633 - 3241982
7350