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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3239669_3240282_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3239669 - 3240282
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCAGGGGCT
5'SS Class:
major
3'SS Sequence:
CCCCTACACCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
GACCCCTACACC
Flanking Amino Acid:
APSPPPPGTRLCCKGFCIDI
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.58
1.2
73.7
33.6
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
51.6
0.04
1
48.7
32.3
Minor 5ss
19.7
-3.5
4.3
29.4
43.4
Minor BPS
45.8
-0.3
2.1
53.62
43.7

Associated Gene:

Gene:
GRIN2C
Ensembl Gene ID:
ENSAPLG00000004598
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040996
3234823 - 3244935
10113