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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3253064_3253184_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
3UTR
Intron Coordinates:
3253064 - 3253184
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACCATCC
5'SS Class:
weak_major
3'SS Sequence:
CGAGGCTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TGAGCCCAGATG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1.3
51.9
40.5
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
62.4
0.28
1
50.6
43.7
Minor 5ss
44.2
-0.6
3.1
60.8
43.9
Minor BPS
41.1
-0.8
2
44.38
41.9

Associated Gene:

Gene:
FDXR
Ensembl Gene ID:
ENSAPLG00000004911
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005101
3252737 - 3259999
7263