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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3257506_3257996_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3257506 - 3257996
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
ATTTGCTCACGG
Flanking Amino Acid:
WYNGLPENRDLKPDLSCETA
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.7
33.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
79
0.65
0.7
74
24.2
Minor 5ss
32
-2.1
2.6
34
34
Minor BPS
42.2
-0.7
2.4
53.58
47.2

Associated Gene:

Gene:
FDXR
Ensembl Gene ID:
ENSAPLG00000004911
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032250
3252737 - 3261015
8279
ENSAPLT00000005101
3252737 - 3259999
7263
ENSAPLT00000036846
3252737 - 3261015
8279