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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3268002_3270657_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
3268002 - 3270657
Intron Length:
2656

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGA|GCATCCTTG
5'SS Class:
weak_minor
3'SS Sequence:
CTGCAGCCGGCAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
AGAAGAT
U12 Branch Point Sequence:
AGATGCTGGAGG
Flanking Amino Acid:
LPQLRMEPEQFGVL
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
46.6
-0.2
1.4
39.9
46.3
Major BPS
47.4
-0.1
1.2
40.8
39.7
Major PPT
56.8
0.15
1.1
50.5
39
Minor 5ss
50.3
0.01
3.7
68.5
43.7
Minor BPS
40.9
-0.8
2.1
42.99
42.1

Associated Gene:

Gene:
FADS6
Ensembl Gene ID:
ENSAPLG00000005172
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005347
3264406 - 3270703
6298