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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_328249_328701_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
328249 - 328701
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGAAC
5'SS Class:
major
3'SS Sequence:
TTTGATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTGTTTGATT
Flanking Amino Acid:
SGNWEASIWKFFFRKVEYGV
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
75.1
34.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86.1
0.81
0.8
80.1
37.1
Minor 5ss
35
-1.7
3.3
47.5
41.6
Minor BPS
67.2
0.62
1.7
86.34
34.1

Associated Gene:

Gene:
DHRS7C
Ensembl Gene ID:
ENSAPLG00000004529
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004678
328040 - 344136
16097