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Intron Name: Anas_platyrhynchos_platyrhynchos_19_3293850_3295974_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3293850 - 3295974

Intron Length:

2125

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GCA|GCAAACACT

5'SS Class:

weak_major

3'SS Sequence:

TCGAGCCAGATAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GACACAA

U12 Branch Point Sequence:

CTGGCTTCGAGC

Flanking Amino Acid:

GIGSIAQGTPYSHQPSAP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.2

0.05

1.4

41.9

Major BPS

47.2

-0.1

1.1

52.9

34.1

Major PPT

49.4

-0

43.1

37.8

Minor 5ss

33.2

-1.9

4.1

55.2

Minor BPS

-0.5

1.9

48.7

42.5

Associated Gene:

Gene:

OTOP2

Ensembl Gene ID:

ENSAPLG00000005251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005424

3293825 - 3300738

6914