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Intron Name: Anas_platyrhynchos_platyrhynchos_19_3299429_3299512_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3299429 - 3299512

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAA|GCACGGTTC

5'SS Class:

major

3'SS Sequence:

CCGACGGCAGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

GCGTGCCCGACG

Flanking Amino Acid:

LHRQPPKEDHNTLAPSTAPG

Intron Amino Acid Position:

471

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.2

69.1

38.8

Major BPS

0.52

1.1

77.7

35.3

Major PPT

50.5

0.01

37.3

Minor 5ss

31.6

-2.1

4.5

49.2

41.8

Minor BPS

38.7

-1

2.2

40.12

43.9

Associated Gene:

Gene:

OTOP2

Ensembl Gene ID:

ENSAPLG00000005251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031700

3294091 - 3300738

6648