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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3308546_3309492_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3308546 - 3309492
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAATTCT
5'SS Class:
major
3'SS Sequence:
GTTGTTTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TGTTTATTTACT
Flanking Amino Acid:
DSHAGPVWIRGSLLLFGSFS
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
74.7
36.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
77
0.61
1
69.2
46.1
Minor 5ss
41.8
-0.9
2.9
50.9
45.6
Minor BPS
60
0.4
1.9
81.9
39

Associated Gene:

Gene:
OTOP3
Ensembl Gene ID:
ENSAPLG00000005532
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005708
3306614 - 3313365
6752