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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3310400_3310753_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3310400 - 3310753
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAAA
5'SS Class:
major
3'SS Sequence:
TCTGTTCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTCTGTTCATC
Flanking Amino Acid:
DCIQVQHNLTRCGLMLTIAT
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.4
38.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78
0.63
0.9
70
40.6
Minor 5ss
29.9
-2.3
3.3
39.1
46.3
Minor BPS
47
-0.2
2.4
66.76
39.6

Associated Gene:

Gene:
OTOP3
Ensembl Gene ID:
ENSAPLG00000005532
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005708
3306614 - 3313365
6752