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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3312153_3312299_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3312153 - 3312299
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAC|GCAGGACAC
5'SS Class:
weak_major
3'SS Sequence:
AGCACACGACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCAAAA
U12 Branch Point Sequence:
AAGAGCAAAACC
Flanking Amino Acid:
PFVAAIEARHRRVSVLELGQ
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.4
0.2
2
57.5
44
Major BPS
47.7
-0.1
1
51
32
Major PPT
48.9
-0
1.1
37.2
39.1
Minor 5ss
21.9
-3.2
4
31.9
35.6
Minor BPS
40
-0.7
2.1
47.67
41.4

Associated Gene:

Gene:
OTOP3
Ensembl Gene ID:
ENSAPLG00000005532
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005708
3306614 - 3313365
6752