Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3318667_3319083_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3318667 - 3319083

Intron Length:

417

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGGGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTACTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

GCTTTCTTACTC

Flanking Amino Acid:

SGQWTPTPDWVMSWKSKLPL

Intron Amino Acid Position:

701

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

69.3

37.4

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

0.72

0.8

76.6

30.9

Minor 5ss

28.1

-2.5

3.4

28.9

43.6

Minor BPS

60.1

0.3

1.6

40.4

Associated Gene:

Gene:

HID1

Ensembl Gene ID:

ENSAPLG00000005782

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038311

3317521 - 3343001

25481

ENSAPLT00000005997

3317521 - 3337384

19864