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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3345800_3357389_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3345800 - 3357389
Intron Length:
11590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGGAAC
U12 Branch Point Sequence:
GCCGCAGGAACC
Flanking Amino Acid:
PWYDQQDLEQDLHLAAELGK
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
73.4
43.3
Major BPS
41.9
-0.5
1.3
42.7
36.4
Major PPT
84.5
0.78
0.8
76.2
37.8
Minor 5ss
35.4
-1.7
3.2
40.5
45.5
Minor BPS
38.6
-0.8
2.2
44.67
43.3

Associated Gene:

Gene:
CDR2L
Ensembl Gene ID:
ENSAPLG00000006222
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006442
3345721 - 3362240
16520