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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_336427_337757_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
336427 - 337757
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
AGTCCTTGAAAT
Flanking Amino Acid:
ALISVADPSMTYTPKLILLD
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
82.8
0.74
0.9
85.1
29.7
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
55.6
0.25
1.5
71.45
38.6

Associated Gene:

Gene:
DHRS7C
Ensembl Gene ID:
ENSAPLG00000004529
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004678
328040 - 344136
16097