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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3367608_3367981_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3367608 - 3367981
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGTGGGGG
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCCTCCTCACGT
Flanking Amino Acid:
GDTGSLGVPGDRLTVSYSRS
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1
49.2
41.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
29.4
-2.4
3.4
34
44.2
Minor BPS
48
-0
2.1
67.41
49.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006285
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024286
3367059 - 3369421
2363