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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3377959_3378185_F

Intron Information:

Intron Rank:
141061
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
3377959 - 3378185
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCCACC
5'SS Class:
weak_major
3'SS Sequence:
TCTTGTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AATTAACAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
62.4
42.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
85.8
0.81
0.8
80.7
31.4
Minor 5ss
58
0.27
2
70.5
39.7
Minor BPS
39
-0.9
2.1
46.22
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025993
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025668
3377685 - 3379071
1387