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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3378306_3378409_F

Intron Information:

Intron Rank:
141062
Intron Class:
major
Intron Phase:
Intron Coordinates:
3378306 - 3378409
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCATTCACAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
85.5
0.8
0.8
80.4
31.5
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
50.8
0
1.8
64.21
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025993
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025668
3377685 - 3379071
1387