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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_337871_343980_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
337871 - 343980
Intron Length:
6110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTCTGAATG
Flanking Amino Acid:
ITDAISRLGNECSRVFHTGG
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.7
0.69
0.7
74.4
30.8
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
71.5
0.54
1.4
75.82
36

Associated Gene:

Gene:
DHRS7C
Ensembl Gene ID:
ENSAPLG00000004529
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004678
328040 - 344136
16097