Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3380428_3381222_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3380428 - 3381222

Intron Length:

795

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTACC

5'SS Class:

strong_major

3'SS Sequence:

CTCCAATTTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

TCTCCTCCAATT

Flanking Amino Acid:

AGMVDEFQKKFSALKVPEPV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

1.2

78.8

35.5

Major BPS

81.6

0.78

0.8

24.9

Major PPT

75.7

0.58

0.9

68.2

36.2

Minor 5ss

32.4

-2

2.5

38.4

39.2

Minor BPS

0.01

1.9

70.25

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006404

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006638

3379699 - 3382828

3130