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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3381320_3381807_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3381320 - 3381807
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
CGTGAGGTGACT
Flanking Amino Acid:
LKTRSDALSARLASLPEKPP
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
68
0.45
1
57.8
39
Major PPT
68.8
0.42
0.8
66
30.2
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
37.2
-0.9
2.6
56.22
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006404
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006638
3379699 - 3382828
3130