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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3382568_3383590_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3382568 - 3383590
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
GCACACCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CACACCCTACAG
Flanking Amino Acid:
QDGPELGSDKDETGAYLIDR
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
63.6
0.31
0.9
54.1
36.1
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
39.9
-0.9
2
39.17
43.6

Associated Gene:

Gene:
KCTD2
Ensembl Gene ID:
ENSAPLG00000006279
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006504
3382297 - 3386483
4187