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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3383700_3384232_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3383700 - 3384232
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAGAA
U12 Branch Point Sequence:
AGGAACAGAATT
Flanking Amino Acid:
LIINKELAEEGVLEEAEFYN
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
49.3
-0
0.9
44.7
28.3
Major PPT
75.4
0.57
0.8
73.4
31.5
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
42.4
-0.5
1.8
55.44
39.8

Associated Gene:

Gene:
KCTD2
Ensembl Gene ID:
ENSAPLG00000006279
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006504
3382297 - 3386483
4187