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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3413120_3414057_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3413120 - 3414057
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGTGTCTGACAC
Flanking Amino Acid:
DNETLVEFAIGGLCNLCLDK
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
83.4
0.75
0.9
80.8
36.8
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
45.3
-0.3
1.9
56.74
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006788
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007037
3412803 - 3414395
1593