About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3420809_3425247_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3420809 - 3425247
Intron Length:
4439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
AATACCTTAAAA
Flanking Amino Acid:
KGGDGGGETSENTEADVEAA
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
69.7
0.61
1.4
73.85
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017876
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040438
3420660 - 3430597
9938