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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3427359_3427950_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3427359 - 3427950
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
AATCTTGCAACC
Flanking Amino Acid:
ENPPSWAKSSGTKPGEIRED
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
77.6
0.62
0.8
69.5
36.8
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
43.9
-0.4
2
55.2
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017876
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040438
3420660 - 3430597
9938