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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3428094_3430541_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3428094 - 3430541
Intron Length:
2448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCGCCGG
5'SS Class:
major
3'SS Sequence:
AATCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TAAAGTTGAATC
Flanking Amino Acid:
GMDPSGRNSSRVLRPPGGGS
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.4
45.6
49.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
80
0.68
0.8
74
35.7
Minor 5ss
31.6
-2.1
3.1
39.6
45.7
Minor BPS
46
-0.3
1.8
54.02
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017876
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040438
3420660 - 3430597
9938