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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3437881_3439365_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3437881 - 3439365
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGCTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAT
U12 Branch Point Sequence:
TTTTCTGCTATA
Flanking Amino Acid:
PINETDTPAQLEMEDEDTID
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
74.7
35.6
Major BPS
67.4
0.43
1.1
57.4
41.4
Major PPT
81.7
0.71
0.8
77.1
31.8
Minor 5ss
39
-1.2
3
51.2
45.7
Minor BPS
45.4
-0.3
2.4
66.84
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006800
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007055
3437818 - 3443898
6081