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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3442538_3443877_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3442538 - 3443877
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTCCTCAACA
Flanking Amino Acid:
MADEKPKEGVKTENNDH
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.3
0.57
0.9
70.4
35.1
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
78
0.88
1.4
85.01
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006800
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007055
3437818 - 3443898
6081