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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3453212_3453577_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3453212 - 3453577
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTGGTTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGCTCACAGACT
Flanking Amino Acid:
PSKHKLFWNVVDVFVLQGRM
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
75.8
0.58
1
68.9
42
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
44.3
-0.3
2.2
66.06
44.3

Associated Gene:

Gene:
NUP85
Ensembl Gene ID:
ENSAPLG00000007065
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044360
3450225 - 3461662
11438
ENSAPLT00000007378
3450225 - 3461662
11438