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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3454916_3455313_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3454916 - 3455313
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTCTTGTAATT
Flanking Amino Acid:
KPMELHFYAQSSMDLFLGEE
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
73.7
42.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
85.2
0.79
0.7
80.4
31.3
Minor 5ss
30.9
-2.2
4
48
47.7
Minor BPS
51.6
0.13
2
73.2
38.3

Associated Gene:

Gene:
NUP85
Ensembl Gene ID:
ENSAPLG00000007065
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044360
3450225 - 3461662
11438
ENSAPLT00000007378
3450225 - 3461662
11438