Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3456315_3456770_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3456315 - 3456770

Intron Length:

456

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAATT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTACTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGGAAT

U12 Branch Point Sequence:

GAATGCTTGACT

Flanking Amino Acid:

EYASGLFSHHSLWQLGVDYF

Intron Amino Acid Position:

415

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.1

84.6

33.3

Major BPS

59.5

0.24

1.5

69.7

44.2

Major PPT

84.2

0.77

0.8

81.2

29.6

Minor 5ss

-0.5

66.7

44.2

Minor BPS

60.6

0.41

1.8

73.85

42.7

Associated Gene:

Gene:

NUP85

Ensembl Gene ID:

ENSAPLG00000007065

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044360

3450225 - 3461662

11438

ENSAPLT00000007378

3450225 - 3461662

11438