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Intron Name: Anas_platyrhynchos_platyrhynchos_19_3458432_3460117_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3458432 - 3460117

Intron Length:

1686

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGAAGG

5'SS Class:

major

3'SS Sequence:

CACCCACGTGTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTTTTAC

U12 Branch Point Sequence:

TTACCCTTCACC

Flanking Amino Acid:

MLLSDRLTFLGKYREFHRLY

Intron Amino Acid Position:

539

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

0.9

64.2

41.6

Major BPS

74.2

0.6

39.4

Major PPT

57.6

0.17

0.9

50.7

32.6

Minor 5ss

27.6

-2.6

2.7

28.4

37.1

Minor BPS

67.6

0.54

1.8

77.03

38.6

Associated Gene:

Gene:

NUP85

Ensembl Gene ID:

ENSAPLG00000007065

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044360

3450225 - 3461662

11438

ENSAPLT00000007378

3450225 - 3461662

11438