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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3460270_3460863_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3460270 - 3460863
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAACATG
5'SS Class:
major
3'SS Sequence:
TCCATTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGTAAAT
Flanking Amino Acid:
DALPLLEQKEVIFSAEQTYE
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.2
40.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
77
0.61
0.8
71.6
32.8
Minor 5ss
36.9
-1.5
3.1
47.8
47.9
Minor BPS
57.5
0.31
2.3
86.72
38.6

Associated Gene:

Gene:
NUP85
Ensembl Gene ID:
ENSAPLG00000007065
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007378
3450225 - 3461662
11438