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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3460270_3461560_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3460270 - 3461560
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAACATG
5'SS Class:
major
3'SS Sequence:
TACTTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACCAA
U12 Branch Point Sequence:
GTAACCAAAATT
Flanking Amino Acid:
DALPLLEQKEDDDVETVKVE
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.2
40.6
Major BPS
49.4
-0
1.3
59.1
37.3
Major PPT
76.3
0.59
0.9
73.8
36.6
Minor 5ss
36.9
-1.5
3.1
47.8
47.9
Minor BPS
48.1
-0
2
67.65
42.8

Associated Gene:

Gene:
NUP85
Ensembl Gene ID:
ENSAPLG00000007065
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044360
3450225 - 3461662
11438