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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3468440_3469279_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3468440 - 3469279
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATTTGTTATTT
Flanking Amino Acid:
SLLDEELLCLGLNDPAPAAV
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
51.5
0.13
2.2
76.26
41

Associated Gene:

Gene:
GGA3
Ensembl Gene ID:
ENSAPLG00000007358
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007673
3464382 - 3483323
18942