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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3471184_3472484_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3471184 - 3472484
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCTGTCCTAATC
Flanking Amino Acid:
SSEADRELMKELYERCETKR
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.8
43.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
83.5
0.75
0.7
76.3
32.3
Minor 5ss
31
-2.2
3.2
40
46.1
Minor BPS
54.5
0.12
1.8
65.95
40.4

Associated Gene:

Gene:
GGA3
Ensembl Gene ID:
ENSAPLG00000007358
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007673
3464382 - 3483323
18942