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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3483794_3484506_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3483794 - 3484506
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGCG
5'SS Class:
major
3'SS Sequence:
TTGTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGATGTTCAACC
Flanking Amino Acid:
LGRRLRAWLPRLTQVRWTRY
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
63.8
40.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89.2
0.88
0.7
84.7
30.1
Minor 5ss
31.2
-2.1
3.3
40.7
45
Minor BPS
50.6
-0
2
64.25
41.2

Associated Gene:

Gene:
MRPS7
Ensembl Gene ID:
ENSAPLG00000007763
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008055
3483738 - 3487218
3481