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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3484699_3485003_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3484699 - 3485003
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAGAA
5'SS Class:
major
3'SS Sequence:
TTTGTGTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAGAATTTAAAT
Flanking Amino Acid:
SCSVFSDPMISKFTNMMMKN
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.3
71.3
34.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.9
0.81
0.9
79.9
37.7
Minor 5ss
25.2
-2.9
3
29.7
43.1
Minor BPS
49.3
0.03
1.6
62.93
40.5

Associated Gene:

Gene:
MRPS7
Ensembl Gene ID:
ENSAPLG00000007763
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008055
3483738 - 3487218
3481