About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3486129_3486996_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3486129 - 3486996
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAGGA
5'SS Class:
major
3'SS Sequence:
AAATCTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CGTGCAATAACT
Flanking Amino Acid:
NITKGGKTYQVPVPLKDNRK
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
64.6
35.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.3
0.48
0.9
62.3
43.2
Minor 5ss
23.7
-3
3.1
29.7
43.1
Minor BPS
49.4
0.03
2
71
45.3

Associated Gene:

Gene:
MRPS7
Ensembl Gene ID:
ENSAPLG00000007763
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008055
3483738 - 3487218
3481