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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3488996_3490241_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3488996 - 3490241
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAG
U12 Branch Point Sequence:
TACCTCTGTACT
Flanking Amino Acid:
QPDSLRKEEEVDCLVLQLHR
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
63.2
0.33
1.5
71.6
36.4
Major PPT
85.5
0.8
0.7
80.5
24.7
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
48.8
-0
1.8
67.1
43.3

Associated Gene:

Gene:
MIF4GD
Ensembl Gene ID:
ENSAPLG00000025678
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041360
3488768 - 3492339
3572