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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3490335_3491520_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3490335 - 3491520
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
CTGTCACCAAGC
Flanking Amino Acid:
AGRICYTIIQVNNMPMMALV
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
82.3
0.73
0.9
73.4
41.9
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
40.6
-0.7
2.2
52.4
44.6

Associated Gene:

Gene:
MIF4GD
Ensembl Gene ID:
ENSAPLG00000025678
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041360
3488768 - 3492339
3572