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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3499314_3500417_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3499314 - 3500417
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTCCTTTAACC
Flanking Amino Acid:
FEHARAAFGQVRMYRGLLDC
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.5
0.69
0.8
72.7
37.2
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
77.7
0.85
1.1
79.59
35.6

Associated Gene:

Gene:
SLC25A19
Ensembl Gene ID:
ENSAPLG00000024769
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047635
3496709 - 3504609
7901