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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3504017_3504483_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3504017 - 3504483
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TGGAATTGAAAA
Flanking Amino Acid:
PLDVIKIRFQLQIEQLSSRT
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
88.9
0.88
0.7
81.2
36.5
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
44.9
-0.3
1.7
52.42
38.7

Associated Gene:

Gene:
SLC25A19
Ensembl Gene ID:
ENSAPLG00000024769
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047635
3496709 - 3504609
7901