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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3509764_3512023_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3509764 - 3512023
Intron Length:
2260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
SAPGDFSLSVKFGNDVQHFK
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
81.4
0.71
0.8
73.4
36.7
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
GRB2
Ensembl Gene ID:
ENSAPLG00000008555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043302
3508075 - 3517864
9790
ENSAPLT00000008898
3508075 - 3520909
12835