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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3512147_3517304_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3512147 - 3517304
Intron Length:
5158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CCTCGCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGTTCTTAACTT
Flanking Amino Acid:
PKNYIEMKPHPWFFGKIPRA
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
71.2
0.48
0.8
64
31.3
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
50.2
0.09
1.9
70.39
41.4

Associated Gene:

Gene:
GRB2
Ensembl Gene ID:
ENSAPLG00000008555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043302
3508075 - 3517864
9790
ENSAPLT00000008898
3508075 - 3520909
12835