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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3517428_3517853_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3517428 - 3517853
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGATTGTT
5'SS Class:
major
3'SS Sequence:
GAAATGTGGTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTGCTGTAACT
Flanking Amino Acid:
AGSILLFVSFLQV
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
76.2
32.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
41.2
-0.5
1.7
39
48.2
Minor 5ss
35.7
-1.6
3.5
53.7
43.7
Minor BPS
64.3
0.53
2.1
87.23
39

Associated Gene:

Gene:
GRB2
Ensembl Gene ID:
ENSAPLG00000008555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043302
3508075 - 3517864
9790