Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3625379_3625508_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3625379 - 3625508

Intron Length:

130

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCACC

5'SS Class:

strong_major

3'SS Sequence:

CCCTCCTGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

GTGGCACTAACC

Flanking Amino Acid:

KTEVVRLLLEGGVDVNIRNT

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

74.9

35.3

Major BPS

64.5

0.36

65.2

28.2

Major PPT

63.5

0.3

60.2

35.3

Minor 5ss

35.2

-1.7

2.8

43.7

Minor BPS

47.8

-0.1

61.22

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028233

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037157

3618879 - 3646962

28084

ENSAPLT00000034453

3618003 - 3646962

28960